HL_4V5O_008

3D structure

PDB id

4V5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

UGUAUUGGA

Length

9 nucleotides

Bulged bases

4V5O|1|AA|G|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5O_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.161

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V5O|1|AA|U|321
4V5O|1|AA|G|322
4V5O|1|AA|U|323
4V5O|1|AA|A|324
4V5O|1|AA|U|325
4V5O|1|AA|U|326
4V5O|1|AA|G|327
4V5O|1|AA|G|328
4V5O|1|AA|A|329

Current chains

Chain AA

18S RRNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S8

Chain AQ

RIBOSOMAL PROTEIN S17 CONTAINING PROTEIN