HL_4V5O_025
3D structure
- PDB id
- 4V5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.93 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 4V5O|1|AA|A|1168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5O_025 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2083
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V5O|1|AA|G|1160
4V5O|1|AA|A|1161
4V5O|1|AA|C|1162
4V5O|1|AA|U|1163
4V5O|1|AA|C|1164
4V5O|1|AA|A|1165
4V5O|1|AA|A|1166
4V5O|1|AA|C|1167
4V5O|1|AA|A|1168
4V5O|1|AA|C|1169
Current chains
- Chain AA
- 18S RRNA
Nearby chains
- Chain A9
- RPS31E
- Chain AI
- RPS16E, 40S RIBOSOMAL PROTEIN RPS16E
- Chain AJ
- RIBOSOMAL PROTEIN S10 CONTAINING PROTEIN
- Chain AN
- RPS29E
Coloring options: