HL_4V61_017

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

4V61|1|AA|U|741

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_017 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.1138

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V61|1|AA|G|734
4V61|1|AA|A|735
4V61|1|AA|U|736
4V61|1|AA|U|737
4V61|1|AA|A|738
4V61|1|AA|G|739
4V61|1|AA|A|740
4V61|1|AA|U|741
4V61|1|AA|A|742
4V61|1|AA|C|743
4V61|1|AA|C|744

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

Ribosomal Protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA