HL_4V61_107
3D structure
- PDB id
- 4V61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.4 Å
Loop
- Sequence
- GCACGUGGAAU
- Length
- 11 nucleotides
- Bulged bases
- 4V61|1|BA|G|398, 4V61|1|BA|U|399
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V61_107 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.2986
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V61|1|BA|G|394
4V61|1|BA|C|395
4V61|1|BA|A|396
4V61|1|BA|C|397
4V61|1|BA|G|398
4V61|1|BA|U|399
4V61|1|BA|G|400
4V61|1|BA|G|401
4V61|1|BA|A|402
4V61|1|BA|A|403
4V61|1|BA|U|404
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B5
- Ribosomal Protein L35
- Chain BY
- Ribosomal Protein L28
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