HL_4V61_113

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GCCUAGAAGCAGC

Length

13 nucleotides

Bulged bases

4V61|1|BA|A|1098

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_113 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3184

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V61|1|BA|G|1091
4V61|1|BA|C|1092
4V61|1|BA|C|1093
4V61|1|BA|U|1094
4V61|1|BA|A|1095
4V61|1|BA|G|1096
4V61|1|BA|A|1097
4V61|1|BA|A|1098
4V61|1|BA|G|1099
4V61|1|BA|C|1100
4V61|1|BA|A|1101
4V61|1|BA|G|1102
4V61|1|BA|C|1103

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

Ribosomal Protein L6

Chain BK

Ribosomal Protein L11

Chain BO

Ribosomal Protein L16