HL_4V65_041

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

4V65|1|BB|C|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_041 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.469

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V65|1|BB|U|158
4V65|1|BB|G|159
4V65|1|BB|A|160
4V65|1|BB|A|161
4V65|1|BB|U|162
4V65|1|BB|C|163
4V65|1|BB|C|164
4V65|1|BB|A|165
4V65|1|BB|U|166
4V65|1|BB|A|167
4V65|1|BB|G|168

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L31