HL_4V68_017
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4V68|1|AA|U|793
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V68_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0838
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
4V68|1|AA|G|786
4V68|1|AA|A|787
4V68|1|AA|U|788
4V68|1|AA|U|789
4V68|1|AA|A|790
4V68|1|AA|G|791
4V68|1|AA|A|792
4V68|1|AA|U|793
4V68|1|AA|A|794
4V68|1|AA|C|795
4V68|1|AA|C|796
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AK
- 30S ribosomal protein S11
- Chain AV
- Transfer RNA; tRNA
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- SYNTHETIC MRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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