HL_4V68_039
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- AGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)U
- Length
- 13 nucleotides
- Bulged bases
- 4V68|1|AY|A|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V68_039 not in the Motif Atlas
- Homologous match to HL_6GSL_221
- Geometric discrepancy: 0.4437
- The information below is about HL_6GSL_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06285.3
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V68|1|AY|A|29
4V68|1|AY|G|30
4V68|1|AY|A|31
4V68|1|AY|OMC|32
4V68|1|AY|U|33
4V68|1|AY|OMG|34
4V68|1|AY|A|35
4V68|1|AY|A|36
4V68|1|AY|YG|37
4V68|1|AY|A|38
4V68|1|AY|PSU|39
4V68|1|AY|5MC|40
4V68|1|AY|U|41
Current chains
- Chain AY
- AT-SITE TRNA
Nearby chains
- Chain A0
- MRNA CODON
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S ribosomal protein S12
- Chain AM
- 30S ribosomal protein S13
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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