HL_4V68_107

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V68|1|BA|G|2751, 4V68|1|BA|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_107 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1711

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V68|1|BA|C|2745
4V68|1|BA|U|2746
4V68|1|BA|G|2747
4V68|1|BA|A|2748
4V68|1|BA|A|2749
4V68|1|BA|A|2750
4V68|1|BA|G|2751
4V68|1|BA|C|2752
4V68|1|BA|A|2753
4V68|1|BA|U|2754
4V68|1|BA|C|2755
4V68|1|BA|U|2756
4V68|1|BA|A|2757
4V68|1|BA|A|2758
4V68|1|BA|G|2759

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13