HL_4V6I_021
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 4V6I|1|CA|A|1196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_021 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.5398
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V6I|1|CA|G|1188
4V6I|1|CA|A|1189
4V6I|1|CA|C|1190
4V6I|1|CA|U|1191
4V6I|1|CA|C|1192
4V6I|1|CA|A|1193
4V6I|1|CA|A|1194
4V6I|1|CA|C|1195
4V6I|1|CA|A|1196
4V6I|1|CA|C|1197
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
- Chain AZ
- 40S ribosomal protein rpS30 (S30e)
- Chain CB
- Transfer RNA; tRNA
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
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