HL_4V6I_024

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

4V6I|1|CA|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_024 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3151

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V6I|1|CA|C|1309
4V6I|1|CA|U|1310
4V6I|1|CA|U|1311
4V6I|1|CA|A|1312
4V6I|1|CA|A|1313
4V6I|1|CA|U|1314
4V6I|1|CA|U|1315
4V6I|1|CA|G|1316

Current chains

Chain CA

18S rRNA

Nearby chains