HL_4V6I_075
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 4V6I|1|DA|C|1846, 4V6I|1|DA|G|1848, 4V6I|1|DA|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_075 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.2601
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V6I|1|DA|C|1844
4V6I|1|DA|G|1845
4V6I|1|DA|C|1846
4V6I|1|DA|A|1847
4V6I|1|DA|G|1848
4V6I|1|DA|C|1849
4V6I|1|DA|A|1850
4V6I|1|DA|G|1851
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BV
- 60S ribosomal protein rpL17 (L22p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
Coloring options: