HL_4V6I_081

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

4V6I|1|DA|A|2138, 4V6I|1|DA|A|2139, 4V6I|1|DA|U|2140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_081 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1926

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V6I|1|DA|U|2135
4V6I|1|DA|C|2136
4V6I|1|DA|U|2137
4V6I|1|DA|A|2138
4V6I|1|DA|A|2139
4V6I|1|DA|U|2140
4V6I|1|DA|U|2141
4V6I|1|DA|A|2142
4V6I|1|DA|A|2143
4V6I|1|DA|A|2144
4V6I|1|DA|A|2145

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein rpL2 (L2p)

Chain Bl

60S ribosomal protein rpL37 (L37e)