HL_4V6I_084

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4V6I|1|DA|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_084 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2374

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V6I|1|DA|G|2253
4V6I|1|DA|U|2254
4V6I|1|DA|A|2255
4V6I|1|DA|A|2256
4V6I|1|DA|C|2257
4V6I|1|DA|U|2258
4V6I|1|DA|A|2259
4V6I|1|DA|U|2260
4V6I|1|DA|G|2261
4V6I|1|DA|A|2262
4V6I|1|DA|C|2263

Current chains

Chain DA

25S rRNA

Nearby chains

Chain AC

40S ribosomal protein rpS9 (S4p)

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CB

Transfer RNA; tRNA