HL_4V6I_085

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4V6I|1|DA|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_085 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.177

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V6I|1|DA|U|2292
4V6I|1|DA|C|2293
4V6I|1|DA|U|2294
4V6I|1|DA|A|2295
4V6I|1|DA|A|2296
4V6I|1|DA|U|2297
4V6I|1|DA|U|2298
4V6I|1|DA|A|2299
4V6I|1|DA|G|2300

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain CA

Small subunit ribosomal RNA; SSU rRNA