HL_4V6I_114
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_114 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.2018
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
4V6I|1|CA|A|900
4V6I|1|CA|G|901
4V6I|1|CA|G|902
4V6I|1|CA|U|903
4V6I|1|CA|G|904
4V6I|1|CA|A|905
4V6I|1|CA|A|906
4V6I|1|CA|A|907
4V6I|1|CA|U|908
4V6I|1|CA|U|909
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein rpS5 (S7p)
- Chain AK
- 40S ribosomal protein rpS14 (S11p)
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: