HL_4V6K_007

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_007 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1893

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6K|1|AB|U|158
4V6K|1|AB|G|159
4V6K|1|AB|A|160
4V6K|1|AB|A|161
4V6K|1|AB|U|162
4V6K|1|AB|C|163
4V6K|1|AB|C|164
4V6K|1|AB|A|165
4V6K|1|AB|U|166
4V6K|1|AB|A|167
4V6K|1|AB|G|168

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AY

50S ribosomal protein L28