HL_4V6K_014

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V6K|1|AB|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_014 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3799

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6K|1|AB|A|382
4V6K|1|AB|C|383
4V6K|1|AB|A|384
4V6K|1|AB|C|385
4V6K|1|AB|G|386
4V6K|1|AB|U|387
4V6K|1|AB|G|388
4V6K|1|AB|G|389
4V6K|1|AB|U|390
4V6K|1|AB|A|391
4V6K|1|AB|U|392

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AY

50S ribosomal protein L28