3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
UUUAUUAAAAA
Length
11 nucleotides
Bulged bases
4V6K|1|AB|U|1782, 4V6K|1|AB|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6K_047 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.2245
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

4V6K|1|AB|U|1777
4V6K|1|AB|U|1778
4V6K|1|AB|U|1779
4V6K|1|AB|A|1780
4V6K|1|AB|U|1781
4V6K|1|AB|U|1782
4V6K|1|AB|A|1783
4V6K|1|AB|A|1784
4V6K|1|AB|A|1785
4V6K|1|AB|A|1786
4V6K|1|AB|A|1787

Current chains

Chain AB
ribosomal RNA 23S

Nearby chains

Chain AD
50S ribosomal protein L2
Chain Ae
50S ribosomal protein L34

Coloring options:


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