HL_4V6K_062

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

4V6K|1|AB|U|2473

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_062 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.4788

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6K|1|AB|A|2471
4V6K|1|AB|G|2472
4V6K|1|AB|U|2473
4V6K|1|AB|U|2474
4V6K|1|AB|C|2475
4V6K|1|AB|A|2476
4V6K|1|AB|U|2477
4V6K|1|AB|A|2478
4V6K|1|AB|U|2479

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AH

50S ribosomal protein L6

Chain Ag

50S ribosomal protein L36

Chain BB

Transfer RNA; tRNA