3D structure

PDB id
4V6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into cognate vs. near-cognate discrimination during decoding.
Experimental method
ELECTRON MICROSCOPY
Resolution
8.25 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
4V6K|1|BA|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6K_088 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1585
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V6K|1|BA|G|786
4V6K|1|BA|A|787
4V6K|1|BA|U|788
4V6K|1|BA|U|789
4V6K|1|BA|A|790
4V6K|1|BA|G|791
4V6K|1|BA|A|792
4V6K|1|BA|U|793
4V6K|1|BA|A|794
4V6K|1|BA|C|795
4V6K|1|BA|C|796

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain AB
Large subunit ribosomal RNA; LSU rRNA
Chain BD
mRNA
Chain BE
Transfer RNA; tRNA
Chain BO
30S ribosomal protein S11

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