HL_4V6N_007

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_007 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2315

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6N|1|AB|U|158
4V6N|1|AB|G|159
4V6N|1|AB|A|160
4V6N|1|AB|A|161
4V6N|1|AB|U|162
4V6N|1|AB|C|163
4V6N|1|AB|C|164
4V6N|1|AB|A|165
4V6N|1|AB|U|166
4V6N|1|AB|A|167
4V6N|1|AB|G|168

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AZ

50S ribosomal protein L28