HL_4V6N_043

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

4V6N|1|AB|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_043 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.5957

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6N|1|AB|A|1630
4V6N|1|AB|G|1631
4V6N|1|AB|A|1632
4V6N|1|AB|G|1633
4V6N|1|AB|A|1634
4V6N|1|AB|A|1635
4V6N|1|AB|U|1636

Current chains

Chain AB

23S ribosomal RNA

Nearby chains