HL_4V6N_047

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V6N|1|AB|A|1780, 4V6N|1|AB|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_047 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.5039

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V6N|1|AB|U|1777
4V6N|1|AB|U|1778
4V6N|1|AB|U|1779
4V6N|1|AB|A|1780
4V6N|1|AB|U|1781
4V6N|1|AB|U|1782
4V6N|1|AB|A|1783
4V6N|1|AB|A|1784
4V6N|1|AB|A|1785
4V6N|1|AB|A|1786
4V6N|1|AB|A|1787

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2