HL_4V6N_087

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_087 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.4085

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V6N|1|BA|G|786
4V6N|1|BA|A|787
4V6N|1|BA|U|788
4V6N|1|BA|U|789
4V6N|1|BA|A|790
4V6N|1|BA|G|791
4V6N|1|BA|A|792
4V6N|1|BA|U|793
4V6N|1|BA|A|794
4V6N|1|BA|C|795
4V6N|1|BA|C|796

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain BC

mRNA

Chain BD

Transfer RNA; tRNA

Chain BN

30S ribosomal protein S11