3D structure

PDB id
4V6N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
12.1 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
4V6N|1|BA|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6N_095 not in the Motif Atlas
Homologous match to HL_5J7L_024
Geometric discrepancy: 0.3929
The information below is about HL_5J7L_024
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

4V6N|1|BA|G|1089
4V6N|1|BA|U|1090
4V6N|1|BA|U|1091
4V6N|1|BA|A|1092
4V6N|1|BA|A|1093
4V6N|1|BA|G|1094
4V6N|1|BA|U|1095
4V6N|1|BA|C|1096

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BE
30S ribosomal protein S2
Chain BJ
30S ribosomal protein S7
Chain BX
30S ribosomal protein S21

Coloring options:


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