HL_4V6O_021
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 4V6O|1|AA|A|968, 4V6O|1|AA|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6O_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.3489
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6O|1|AA|G|963
4V6O|1|AA|A|964
4V6O|1|AA|U|965
4V6O|1|AA|2MG|966
4V6O|1|AA|5MC|967
4V6O|1|AA|A|968
4V6O|1|AA|A|969
4V6O|1|AA|C|970
4V6O|1|AA|G|971
4V6O|1|AA|C|972
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- Transfer RNA; tRNA
- Chain AL
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S10
- Chain AP
- 30S ribosomal protein S13
- Chain AQ
- 30S ribosomal protein S14
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