HL_4V6O_062

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

4V6O|1|BB|A|751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_062 not in the Motif Atlas

Homologous match to HL_5J7L_155

Geometric discrepancy: 0.1742

The information below is about HL_5J7L_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|U|744
4V6O|1|BB|1MG|745
4V6O|1|BB|PSU|746
4V6O|1|BB|5MU|747
4V6O|1|BB|G|748
4V6O|1|BB|A|749
4V6O|1|BB|A|750
4V6O|1|BB|A|751
4V6O|1|BB|A|752
4V6O|1|BB|A|753

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain B5

50S ribosomal protein L34

Chain BE

50S ribosomal protein L3

Chain BU

50S ribosomal protein L22