HL_4V6O_081

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

4V6O|1|BB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_081 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.2988

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6O|1|BB|A|1630
4V6O|1|BB|G|1631
4V6O|1|BB|A|1632
4V6O|1|BB|G|1633
4V6O|1|BB|A|1634
4V6O|1|BB|A|1635
4V6O|1|BB|U|1636

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains