3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
4V6P|1|AA|A|790, 4V6P|1|AA|U|793
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_017 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.4532
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_38491.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V6P|1|AA|G|786
4V6P|1|AA|A|787
4V6P|1|AA|U|788
4V6P|1|AA|U|789
4V6P|1|AA|A|790
4V6P|1|AA|G|791
4V6P|1|AA|A|792
4V6P|1|AA|U|793
4V6P|1|AA|A|794
4V6P|1|AA|C|795
4V6P|1|AA|C|796

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
mRNA
Chain AD
Transfer RNA; tRNA
Chain AN
30S ribosomal protein S11
Chain AX
30S ribosomal protein S21
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1415 s