3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GG(5MU)(PSU)CAAAUCC
Length
11 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6R_115 not in the Motif Atlas
Homologous match to HL_5E81_236
Geometric discrepancy: 0.2709
The information below is about HL_5E81_236
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_23827.2
Basepair signature
cWW-cWW-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V6R|1|AD|G|53
4V6R|1|AD|G|54
4V6R|1|AD|5MU|55
4V6R|1|AD|PSU|56
4V6R|1|AD|C|57
4V6R|1|AD|A|58
4V6R|1|AD|A|59
4V6R|1|AD|A|60
4V6R|1|AD|U|61
4V6R|1|AD|C|62
4V6R|1|AD|C|63

Current chains

Chain AD
P site tRNA

Nearby chains

Chain BB
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S ribosomal protein L1

Coloring options:


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