HL_4V6V_048

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V6V|1|BA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6V_048 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2555

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6V|1|BA|A|382
4V6V|1|BA|C|383
4V6V|1|BA|A|384
4V6V|1|BA|C|385
4V6V|1|BA|G|386
4V6V|1|BA|U|387
4V6V|1|BA|G|388
4V6V|1|BA|G|389
4V6V|1|BA|U|390
4V6V|1|BA|A|391
4V6V|1|BA|U|392

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28