HL_4V6X_023

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4V6X|1|A5|U|1596, 4V6X|1|A5|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_023 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.187

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4V6X|1|A5|A|1593
4V6X|1|A5|C|1594
4V6X|1|A5|G|1595
4V6X|1|A5|U|1596
4V6X|1|A5|G|1597
4V6X|1|A5|C|1598
4V6X|1|A5|A|1599
4V6X|1|A5|A|1600
4V6X|1|A5|A|1601
4V6X|1|A5|U|1602

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L17

Chain Cj

60S ribosomal protein L37