HL_4V6X_030
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 4V6X|1|A5|A|1984
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6X_030 not in the Motif Atlas
- Homologous match to HL_5TBW_027
- Geometric discrepancy: 0.3519
- The information below is about HL_5TBW_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V6X|1|A5|C|1978
4V6X|1|A5|A|1979
4V6X|1|A5|U|1980
4V6X|1|A5|G|1981
4V6X|1|A5|G|1982
4V6X|1|A5|A|1983
4V6X|1|A5|A|1984
4V6X|1|A5|G|1985
4V6X|1|A5|U|1986
4V6X|1|A5|C|1987
4V6X|1|A5|G|1988
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain Az
- Elongation factor 2
- Chain CK
- 60S ribosomal protein L12
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