HL_4V6X_044

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

4V6X|1|A5|C|2794, 4V6X|1|A5|G|2796, 4V6X|1|A5|A|2798

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_044 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.2861

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6X|1|A5|C|2792
4V6X|1|A5|G|2793
4V6X|1|A5|C|2794
4V6X|1|A5|A|2795
4V6X|1|A5|G|2796
4V6X|1|A5|C|2797
4V6X|1|A5|A|2798
4V6X|1|A5|G|2799

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L17

Chain Cj

60S ribosomal protein L37

Chain Cl

60S ribosomal protein L39