HL_4V6X_057

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

4V6X|1|A5|A|4214, 4V6X|1|A5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_057 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1953

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

4V6X|1|A5|U|4210
4V6X|1|A5|C|4211
4V6X|1|A5|A|4212
4V6X|1|A5|A|4213
4V6X|1|A5|A|4214
4V6X|1|A5|C|4215
4V6X|1|A5|G|4216
4V6X|1|A5|G|4217
4V6X|1|A5|U|4218
4V6X|1|A5|A|4219
4V6X|1|A5|A|4220
4V6X|1|A5|C|4221
4V6X|1|A5|G|4222

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L10-like

Chain CT

60S ribosomal protein L21

Chain Cb

60S ribosomal protein L29