HL_4V6X_084

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

4V6X|1|B2|U|294

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_084 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2001

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V6X|1|B2|G|288
4V6X|1|B2|G|289
4V6X|1|B2|U|290
4V6X|1|B2|G|291
4V6X|1|B2|A|292
4V6X|1|B2|C|293
4V6X|1|B2|U|294
4V6X|1|B2|C|295

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AL

40S ribosomal protein S11