HL_4V6X_096
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UAUUUUGUUGGUUUUCG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6X_096 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.4322
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V6X|1|B2|U|885
4V6X|1|B2|A|886
4V6X|1|B2|U|887
4V6X|1|B2|U|888
4V6X|1|B2|U|889
4V6X|1|B2|U|890
4V6X|1|B2|G|891
4V6X|1|B2|U|892
4V6X|1|B2|U|893
4V6X|1|B2|G|894
4V6X|1|B2|G|895
4V6X|1|B2|U|896
4V6X|1|B2|U|897
4V6X|1|B2|U|898
4V6X|1|B2|U|899
4V6X|1|B2|C|900
4V6X|1|B2|G|901
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AG
- 40S ribosomal protein S6
- Chain AL
- 40S ribosomal protein S11
Coloring options: