HL_4V6X_103

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

4V6X|1|B2|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_103 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.2054

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6X|1|B2|G|1245
4V6X|1|B2|A|1246
4V6X|1|B2|C|1247
4V6X|1|B2|U|1248
4V6X|1|B2|C|1249
4V6X|1|B2|A|1250
4V6X|1|B2|A|1251
4V6X|1|B2|C|1252
4V6X|1|B2|A|1253
4V6X|1|B2|C|1254

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Ah

Plasminogen activator inhibitor 1 RNA-binding protein

Chain BC

Transfer RNA; tRNA