HL_4V6X_104

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

4V6X|1|B2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6X_104 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2863

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V6X|1|B2|A|1295
4V6X|1|B2|U|1296
4V6X|1|B2|U|1297
4V6X|1|B2|G|1298
4V6X|1|B2|A|1299
4V6X|1|B2|U|1300
4V6X|1|B2|A|1301
4V6X|1|B2|G|1302
4V6X|1|B2|C|1303
4V6X|1|B2|U|1304

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain Ad

40S ribosomal protein S29

Chain Af

40S ribosomal protein S27a