3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V79_023 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.348
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V79|1|AA|G|786
4V79|1|AA|A|787
4V79|1|AA|U|788
4V79|1|AA|U|789
4V79|1|AA|A|790
4V79|1|AA|G|791
4V79|1|AA|A|792
4V79|1|AA|U|793
4V79|1|AA|A|794
4V79|1|AA|C|795
4V79|1|AA|C|796

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain A2
5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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