3D structure

PDB id
4V7C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
4V7C|1|AA|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7C_017 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.129
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4V7C|1|AA|G|786
4V7C|1|AA|A|787
4V7C|1|AA|U|788
4V7C|1|AA|U|789
4V7C|1|AA|A|790
4V7C|1|AA|G|791
4V7C|1|AA|A|792
4V7C|1|AA|U|793
4V7C|1|AA|A|794
4V7C|1|AA|C|795
4V7C|1|AA|C|796

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain AW
Transfer RNA; tRNA
Chain AX
mRNA
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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