HL_4V7E_022

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|U|882, 4V7E|1|Aa|A|886

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_022 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0799

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|A|879
4V7E|1|Aa|C|880
4V7E|1|Aa|G|881
4V7E|1|Aa|U|882
4V7E|1|Aa|G|883
4V7E|1|Aa|C|884
4V7E|1|Aa|A|885
4V7E|1|Aa|A|886
4V7E|1|Aa|A|887
4V7E|1|Aa|U|888

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L22

Chain Cj

60S ribosomal protein L37E