HL_4V7E_041

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CACGUCGCGCGG

Length

12 nucleotides

Bulged bases

4V7E|1|Aa|C|1759, 4V7E|1|Aa|G|1760, 4V7E|1|Aa|C|1761

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_041 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3847

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|C|1754
4V7E|1|Aa|A|1755
4V7E|1|Aa|C|1756
4V7E|1|Aa|G|1757
4V7E|1|Aa|U|1758
4V7E|1|Aa|C|1759
4V7E|1|Aa|G|1760
4V7E|1|Aa|C|1761
4V7E|1|Aa|G|1762
4V7E|1|Aa|C|1763
4V7E|1|Aa|G|1764
4V7E|1|Aa|G|1765

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain CU

60S ribosomal protein L22E