HL_4V7E_042

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGCAUCAG

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|U|1844, 4V7E|1|Aa|A|1846

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_042 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.1979

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V7E|1|Aa|C|1840
4V7E|1|Aa|G|1841
4V7E|1|Aa|C|1842
4V7E|1|Aa|A|1843
4V7E|1|Aa|U|1844
4V7E|1|Aa|C|1845
4V7E|1|Aa|A|1846
4V7E|1|Aa|G|1847

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L22

Chain Cj

60S ribosomal protein L37E

Chain Cl

60S ribosomal protein L39E