HL_4V7E_047

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|A|2132, 4V7E|1|Aa|A|2133, 4V7E|1|Aa|U|2134, 4V7E|1|Aa|A|2138

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_047 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1427

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V7E|1|Aa|U|2129
4V7E|1|Aa|U|2130
4V7E|1|Aa|U|2131
4V7E|1|Aa|A|2132
4V7E|1|Aa|A|2133
4V7E|1|Aa|U|2134
4V7E|1|Aa|U|2135
4V7E|1|Aa|A|2136
4V7E|1|Aa|A|2137
4V7E|1|Aa|A|2138
4V7E|1|Aa|A|2139

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain Cj

60S ribosomal protein L37E