HL_4V7E_050

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|A|2251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_050 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2033

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|G|2248
4V7E|1|Aa|U|2249
4V7E|1|Aa|A|2250
4V7E|1|Aa|A|2251
4V7E|1|Aa|C|2252
4V7E|1|Aa|U|2253
4V7E|1|Aa|A|2254
4V7E|1|Aa|U|2255
4V7E|1|Aa|G|2256
4V7E|1|Aa|A|2257
4V7E|1|Aa|C|2258

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain Ae

Transfer RNA; tRNA

Chain Be

40S ribosomal protein S30E