HL_4V7E_064

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|G|2900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_064 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.2639

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V7E|1|Aa|A|2899
4V7E|1|Aa|G|2900
4V7E|1|Aa|C|2901
4V7E|1|Aa|A|2902
4V7E|1|Aa|G|2903
4V7E|1|Aa|A|2904
4V7E|1|Aa|A|2905
4V7E|1|Aa|U|2906

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6

Chain CV

60S ribosomal protein L14

Chain Cm

60S ribosomal protein L40E