HL_4V7E_086

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAUAGGGGC

Length

9 nucleotides

Bulged bases

4V7E|1|Ad|G|341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_086 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2715

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V7E|1|Ad|G|334
4V7E|1|Ad|A|335
4V7E|1|Ad|U|336
4V7E|1|Ad|A|337
4V7E|1|Ad|G|338
4V7E|1|Ad|G|339
4V7E|1|Ad|G|340
4V7E|1|Ad|G|341
4V7E|1|Ad|C|342

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BI

40S ribosomal protein S8E

Chain BL

40S ribosomal protein S17