HL_4V7E_104
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 4V7E|1|Ad|A|1200
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_104 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.2536
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V7E|1|Ad|G|1192
4V7E|1|Ad|A|1193
4V7E|1|Ad|C|1194
4V7E|1|Ad|U|1195
4V7E|1|Ad|C|1196
4V7E|1|Ad|A|1197
4V7E|1|Ad|A|1198
4V7E|1|Ad|C|1199
4V7E|1|Ad|A|1200
4V7E|1|Ad|C|1201
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Ae
- Transfer RNA; tRNA
- Chain BQ
- 40S ribosomal protein S9
- Chain BS
- 40S ribosomal protein S13
- Chain BU
- 40S ribosomal protein S10
Coloring options: